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    4'-phosphopantetheinyl transferase superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820320, updated on 18-Sep-2024

    Summary

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    Official Full Name
    4'-phosphopantetheinyl transferase superfamily
    Primary source
    TAIR:AT3G11470
    Locus tag
    AT3G11470
    See related
    Araport:AT3G11470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (3610147..3612639, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene myb domain protein 65 Neighboring gene DnaJ and Myb-like DNA-binding domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene rac GTPase activating protein Neighboring gene ncRNA Neighboring gene Small nuclear ribonucleoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A phosphopantetheinyl transferase that is essential for mitochondrial fatty acid biosynthesis. Guan X, et al. Plant J, 2015 Nov. PMID 26402847
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035594.1
    NM_001337928.1
    NM_001337929.1
    NM_001337930.1
    NM_001337931.1
    NM_001337932.1
    NM_001337933.1
    NM_111980.4
    NM_202555.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables holo-[acyl-carrier-protein] synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables holo-[acyl-carrier-protein] synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables holo-[acyl-carrier-protein] synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein phosphopantetheinylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    4'-phosphopantetheinyl transferase superfamily
    NP_001030671.1
    • 4'-phosphopantetheinyl transferase superfamily; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding, transferase activity; INVOLVED IN: metabolic process, macromolecule biosynthetic process; CONTAINS InterPro DOMAIN/s: 4'-phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: 4'-phosphopantetheinyl transferase superfamily (TAIR:AT2G02770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_187754.2
    • 4'-phosphopantetheinyl transferase superfamily; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding, transferase activity; INVOLVED IN: metabolic process, macromolecule biosynthetic process; CONTAINS InterPro DOMAIN/s: 4'-phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: 4'-phosphopantetheinyl transferase superfamily (TAIR:AT2G02770.1); Has 1803 Blast hits to 1803 proteins in 709 species: Archae - 6; Bacteria - 1517; Metazoa - 102; Fungi - 24; Plants - 73; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
    NP_974284.3
    • 4'-phosphopantetheinyl transferase superfamily; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding, transferase activity; INVOLVED IN: metabolic process, macromolecule biosynthetic process; CONTAINS InterPro DOMAIN/s: 4'-phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: 4'-phosphopantetheinyl transferase superfamily (TAIR:AT2G02770.1); Has 1829 Blast hits to 1829 proteins in 719 species: Archae - 8; Bacteria - 1541; Metazoa - 104; Fungi - 20; Plants - 73; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3610147..3612639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111980.4 → NP_187754.2  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187754.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XBE6, Q8VYK1
      Conserved Domains (2) summary
      COG2091
      Location:54 → 217
      Sfp; Phosphopantetheinyl transferase [Coenzyme transport and metabolism]
      pfam01648
      Location:144 → 266
      ACPS; 4'-phosphopantetheinyl transferase superfamily

    2. NM_001337928.1 → NP_001325584.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLP2, Q9CAY0

    3. NM_001337930.1 → NP_001325589.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI00, A0A1I9LLP7

    4. NM_001337929.1 → NP_001325588.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI00, A0A1I9LLP7

    5. NM_001337933.1 → NP_001325586.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLP4

    6. NM_001337932.1 → NP_001325587.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGB2, A0A1I9LLP5

    7. NM_001035594.1 → NP_001030671.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030671.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J6B2
      Conserved Domains (1) summary
      pfam01648
      Location:75 → 197
      ACPS; 4'-phosphopantetheinyl transferase superfamily

    8. NM_001337931.1 → NP_001325585.1  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLP3

    9. NM_202555.3 → NP_974284.3  4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG72, F4J6B1
    Nucleotide Protein
    Heading Accession and Version

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