U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ECP63 embryonic cell protein 63 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818236, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ECP63
    Official Full Name
    embryonic cell protein 63
    Primary source
    TAIR:AT2G36640
    Locus tag
    AT2G36640
    See related
    Araport:AT2G36640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATECP63; embryonic cell protein 63; F13K3.4; F13K3_4; LEA
    Summary
    Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ECP63 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (15356830..15358619, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene homeobox protein 22 Neighboring gene ribosomal protein L24 Neighboring gene Sulfite exporter TauE/SafE family protein Neighboring gene ncRNA Neighboring gene CHUP1-like protein Neighboring gene poly(A) binding protein 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    2. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001336603.1
    NM_129219.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    embryonic cell protein 63
    NP_181202.1
    • embryonic cell protein 63 (ECP63); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G53040.1); Has 29213 Blast hits to 16834 proteins in 2229 species: Archae - 326; Bacteria - 11175; Metazoa - 5508; Fungi - 2029; Plants - 3175; Viruses - 194; Other Eukaryotes - 6806 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15356830..15358619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129219.3 → NP_181202.1  embryonic cell protein 63 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181202.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GX85, Q96246, Q9SKP0
      UniProtKB/TrEMBL
      A0A178VPA7, A0A5S9X4J7
      Conserved Domains (1) summary
      cl26511
      Location:81 → 354
      Neuromodulin_N; Gap junction protein N-terminal region

    2. NM_001336603.1 → NP_001324810.1  embryonic cell protein 63 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B189
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SKP0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.