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    PPR containing-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839484, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPR containing-like protein
    Primary source
    TAIR:AT1G04590
    Locus tag
    AT1G04590
    See related
    Araport:AT1G04590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1G11.16; T1G11_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (1258556..1261470, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene aldehyde oxidase 4 Neighboring gene myosin XI A Neighboring gene YUCCA 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100338.3
    NM_179259.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPR containing-like protein
    NP_563712.1
    • BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_849590.1
    • BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1258556..1261470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100338.3 → NP_563712.1  PPR containing-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563712.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAM9, A0A654E726, Q9C5I2
      Conserved Domains (1) summary
      sd00004
      Location:216 → 243
      PPR; PPR repeat [structural motif]

    2. NM_179259.1 → NP_849590.1  PPR containing-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849590.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E726, F4I5Q5
      Conserved Domains (1) summary
      sd00004
      Location:216 → 243
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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