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    Pyridoxamine 5'-phosphate oxidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815012, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pyridoxamine 5'-phosphate oxidase family protein
    Primary source
    TAIR:AT2G04690
    Locus tag
    AT2G04690
    See related
    Araport:AT2G04690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I8.27; F28I8_27
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (1644456..1646443)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene ferredoxin thioredoxin reductase catalytic beta chain family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084409.2
    NM_001335241.1
    NM_001335242.1
    NM_001335243.1
    NM_126499.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    Pyridoxamine 5'-phosphate oxidase family protein
    NP_001077878.1
    • Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular repressor of E1A-stimulated genes (CREG) (InterPro:IPR014631), FMN-binding split barrel (InterPro:IPR012349), FMN-binding split barrel, related (InterPro:IPR009002); Has 408 Blast hits to 408 proteins in 115 species: Archae - 0; Bacteria - 83; Metazoa - 160; Fungi - 2; Plants - 80; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
    NP_178546.2
    • Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular repressor of E1A-stimulated genes (CREG) (InterPro:IPR014631), FMN-binding split barrel (InterPro:IPR012349), FMN-binding split barrel, related (InterPro:IPR009002); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1644456..1646443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335240.1 → NP_001324114.1  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1L6, A0A384L3A5, F4IFA9, Q9SJ90
      Conserved Domains (1) summary
      pfam13883
      Location:37 → 200
      Pyrid_oxidase_2; Pyridoxamine 5'-phosphate oxidase

    2. NM_001084409.2 → NP_001077878.1  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077878.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1L6, A0A384L3A5, F4IFA9, Q9SJ90
      Conserved Domains (1) summary
      pfam13883
      Location:37 → 200
      Pyrid_oxidase_2; Pyridoxamine 5'-phosphate oxidase

    3. NM_126499.4 → NP_178546.2  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178546.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W272, Q8RY62
      Conserved Domains (1) summary
      pfam13883
      Location:37 → 200
      Pyrid_oxidase_2; Pyridoxamine 5'-phosphate oxidase

    4. NM_001335241.1 → NP_001324116.1  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZ71

    5. NM_001335242.1 → NP_001324117.1  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZ49

    6. NM_001335243.1 → NP_001324115.1  Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZ71
    Nucleotide Protein
    Heading Accession and Version

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