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    Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844317, updated on 18-Sep-2024

    Summary

    Official Full Name
    Uncharacterized protein family (UPF0497)
    Primary source
    TAIR:AT1G79780
    Locus tag
    AT1G79780
    See related
    Araport:AT1G79780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CASP-like protein 3A2; CASPL3A2; F20B17.26; F20B17_26
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (30015712..30016856)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene downstream target of AGL15-4 Neighboring gene CASP-like protein (DUF1677) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene early nodulin-like protein 7 Neighboring gene Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_106627.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Uncharacterized protein family (UPF0497)
    NP_178096.2
    • Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G16300.1); Has 353 Blast hits to 353 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30015712..30016856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106627.3NP_178096.2  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178096.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFB8, Q3E6P5, Q9MA01
      UniProtKB/TrEMBL
      A0A5S9WVY6, A0A654EQH1
      Conserved Domains (1) summary
      pfam04535
      Location:22158
      DUF588; Domain of unknown function (DUF588)