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    RNA-directed DNA polymerase (reverse transcriptase)-related family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840963, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-directed DNA polymerase (reverse transcriptase)-related family protein
    Primary source
    TAIR:AT1G43730
    Locus tag
    AT1G43730
    See related
    Araport:AT1G43730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J6.21; F2J6_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (16508723..16509784, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNA-directed DNA polymerase (reverse transcriptase)-related family protein
    NP_175039.1
    • RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1); Has 737 Blast hits to 724 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 737; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16508723..16509784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103499.1 → NP_175039.1  RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175039.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WMH0, F4ICS7
      Conserved Domains (1) summary
      pfam13966
      Location:133 → 217
      zf-RVT; zinc-binding in reverse transcriptase
    Nucleotide Protein
    Heading Accession and Version

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