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    NagB/RpiA/CoA transferase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841319, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NagB/RpiA/CoA transferase-like superfamily protein
    Primary source
    TAIR:AT1G48970
    Locus tag
    AT1G48970
    See related
    Araport:AT1G48970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27K7.2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (18113714..18117833, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Oleosin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333362.1
    NM_103790.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NagB/RpiA/CoA transferase-like superfamily protein
    NP_175327.3
    • NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G38640.1); Has 6025 Blast hits to 4716 proteins in 1003 species: Archae - 328; Bacteria - 1823; Metazoa - 882; Fungi - 644; Plants - 274; Viruses - 5; Other Eukaryotes - 2069 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18113714..18117833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103790.3 → NP_175327.3  NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175327.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9M9, F4I048, Q9M999
      Conserved Domains (2) summary
      PTZ00121
      Location:168 → 313
      PTZ00121; MAEBL; Provisional
      pfam01008
      Location:356 → 649
      IF-2B; Initiation factor 2 subunit family

    2. NM_001333362.1 → NP_001322905.1  NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q570L2
    Nucleotide Protein
    Heading Accession and Version

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