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    EMB3103 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837634, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB3103
    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT1G10910
    Locus tag
    AT1G10910
    See related
    Araport:AT1G10910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3103; T19D16.17; T19D16_17
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    Genomic context

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    See EMB3103 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (3639835..3644187)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene arginine/glutamate-rich 1 protein Neighboring gene Phosphatidylinositol-4-phosphate 5-kinase family protein Neighboring gene NB-ARC domain-containing disease resistance protein Neighboring gene DNA helicase (RECQl4A) Neighboring gene Protein kinase superfamily protein Neighboring gene transmembrane nine 1 Neighboring gene ferredoxin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Pentratricopeptide Repeat Protein Pigment-Defective Mutant2 is Involved in the Regulation of Chloroplast Development and Chloroplast Gene Expression in Arabidopsis. Du L, et al. Plant Cell Physiol, 2017 Apr 1. PMID 28158776
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AT1G10910 is involved in the regulation of plastid gene expression and normal chloroplast development.
      Title: The Pentratricopeptide Repeat Protein Pigment-Defective Mutant2 is Involved in the Regulation of Chloroplast Development and Chloroplast Gene Expression in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_100966.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast RNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_172560.2
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1); Has 41177 Blast hits to 13618 proteins in 293 species: Archae - 1; Bacteria - 42; Metazoa - 324; Fungi - 460; Plants - 39061; Viruses - 0; Other Eukaryotes - 1289 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3639835..3644187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331941.1 → NP_001320560.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN66, A0A654E9W1
      Conserved Domains (2) summary
      PLN03218
      Location:21 → 455
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:168 → 195
      PPR; PPR repeat [structural motif]

    2. NM_100966.3 → NP_172560.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172560.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04094, Q0WVV0
      UniProtKB/TrEMBL
      A0A5S9TQB7
      Conserved Domains (5) summary
      TIGR00756
      Location:167 → 201
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:168 → 195
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:273 → 303
      PPR; PPR repeat
      pfam12854
      Location:195 → 227
      PPR_1; PPR repeat
      pfam13041
      Location:165 → 213
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WVV0.1

    Gene LinkOut

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