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    girdin (DUF630 and DUF632) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838641, updated on 18-Sep-2024

    Summary

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    Official Full Name
    girdin (DUF630 and DUF632)
    Primary source
    TAIR:AT1G20530
    Locus tag
    AT1G20530
    See related
    Araport:AT1G20530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5M15.15; F5M15_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (7108203..7110634, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene OPC-8:0 CoA ligase1 Neighboring gene ncRNA Neighboring gene DUF241 domain protein, putative (DUF241) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene acyl activating enzyme 1 Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101903.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    girdin (DUF630 and DUF632)
    NP_173477.1
    • Protein of unknown function (DUF630 and DUF632); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1); Has 3752 Blast hits to 2914 proteins in 298 species: Archae - 59; Bacteria - 209; Metazoa - 1260; Fungi - 213; Plants - 622; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7108203..7110634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101903.2 → NP_173477.1  girdin (DUF630 and DUF632) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173477.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBG5, A0A654ECD4, Q9LMW0
      Conserved Domains (2) summary
      pfam04782
      Location:234 → 529
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 58
      DUF630; Protein of unknown function (DUF630)
    Nucleotide Protein
    Heading Accession and Version

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