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    AIR12 auxin-induced in root cultures-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819927, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AIR12
    Official Full Name
    auxin-induced in root cultures-like protein
    Primary source
    TAIR:AT3G07390
    Locus tag
    AT3G07390
    See related
    Araport:AT3G07390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Auxin-Induced in Root cultures 12
    Summary
    isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
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    Genomic context

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    See AIR12 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (2365301..2366496)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family protein (DUF23) Neighboring gene miscRNA Neighboring gene lipase class 3 family protein Neighboring gene RAB GTPase homolog A5B Neighboring gene asparaginyl-tRNA synthetase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AIR12, a b-type cytochrome of the plasma membrane of Arabidopsis thaliana is a negative regulator of resistance against Botrytis cinerea. Costa A, et al. Plant Sci, 2015 Apr. PMID 25711811
    2. Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation. Neuteboom LW, et al. Plant Mol Biol, 1999 Jan. PMID 10080694
    3. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    4. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    5. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337711.1
    NM_111618.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within extracellular matrix organization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root morphogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin-induced in root cultures-like protein
    NP_566306.3
    • Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2365301..2366496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111618.3 → NP_566306.3  auxin-induced in root cultures-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566306.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JEF2, O82442, Q94BT2, Q9SRS7
      UniProtKB/TrEMBL
      A0A178VEI7
      Conserved Domains (2) summary
      PHA03185
      Location:182 → 246
      PHA03185; UL14 tegument protein; Provisional
      cd09629
      Location:61 → 213
      DOMON_CIL1_like; DOMON-like domain of Brassica carinata CIL1 and similar proteins

    2. NM_001337711.1 → NP_001327216.1  auxin-induced in root cultures-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRM3
    Nucleotide Protein
    Heading Accession and Version

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