U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ARFB1C ADP-ribosylation factor B1C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821079, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ARFB1C
    Official Full Name
    ADP-ribosylation factor B1C
    Primary source
    TAIR:AT3G03120
    Locus tag
    AT3G03120
    See related
    Araport:AT3G03120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADP-ribosylation factor B1C; ATARFB1C; T17B22.19; T17B22_19
    Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ARFB1C in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (717143..719449)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase, 17.2kDa subunit Neighboring gene exportin 1B Neighboring gene ncRNA Neighboring gene lisH domain-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Analysis of the small GTPase gene superfamily of Arabidopsis. Vernoud V, et al. Plant Physiol, 2003 Mar. PMID 12644670, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_111182.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ADP-ribosylation factor B1C
    NP_186962.1
    • ADP-ribosylation factor B1C (ARFB1C); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1B (TAIR:AT5G17060.1); Has 12521 Blast hits to 12513 proteins in 459 species: Archae - 8; Bacteria - 10; Metazoa - 6191; Fungi - 1629; Plants - 2029; Viruses - 3; Other Eukaryotes - 2651 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      717143..719449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337458.1 → NP_001326842.1  ADP-ribosylation factor B1C [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQI0

    2. NM_111182.3 → NP_186962.1  ADP-ribosylation factor B1C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186962.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH47, A0A384KVK5, Q9M9N1
      Conserved Domains (1) summary
      cd04150
      Location:18 → 176
      Arf1_5_like; ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools