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    RCI2A Low temperature and salt responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819757, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RCI2A
    Official Full Name
    Low temperature and salt responsive protein family
    Primary source
    TAIR:AT3G05880
    Locus tag
    AT3G05880
    See related
    Araport:AT3G05880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A16.18; F10A16_18; RARE-COLD-INDUCIBLE 2A
    Summary
    Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains.
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    Genomic context

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    See RCI2A in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (1755497..1756924, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene MADS-box transcription factor family protein Neighboring gene anaphase-promoting complex/cyclosome 11 Neighboring gene ncRNA Neighboring gene Low temperature and salt responsive protein family Neighboring gene ncRNA Neighboring gene neurofilament protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ectopic expression of Arabidopsis RCI2A gene contributes to cold tolerance in tomato. Sivankalyani V, et al. Transgenic Res, 2015 Apr. PMID 25260337
    2. Disruption of RCI2A leads to over-accumulation of Na+ and increased salt sensitivity in Arabidopsis thaliana plants. Mitsuya S, et al. Planta, 2005 Dec. PMID 16034593
    3. Arabidopsis mutants deregulated in RCI2A expression reveal new signaling pathways in abiotic stress responses. Medina J, et al. Plant J, 2005 May. PMID 15860016
    4. Two homologous low-temperature-inducible genes from Arabidopsis encode highly hydrophobic proteins. Capel J, et al. Plant Physiol, 1997 Oct. PMID 9342870, Free PMC Article
    5. Membrane hyperpolarization and salt sensitivity induced by deletion of PMP3, a highly conserved small protein of yeast plasma membrane. Navarre C, et al. EMBO J, 2000 Jun 1. PMID 10835350, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Our findings may strengthen the understanding of the molecular function of RCI2A in cold-stress tolerance. RCI2A could be used to improve abiotic stress tolerance in agronomic crops
      Title: Ectopic expression of Arabidopsis RCI2A gene contributes to cold tolerance in tomato.
    2. The expression of multiple RCI2a mutants in responset to ABA, DNA or NaCl, low temperature, or the stress induced expressio nof RD29A is reported.
      Title: Arabidopsis mutants deregulated in RCI2A expression reveal new signaling pathways in abiotic stress responses.
    3. results suggest that RCI2A plays a role directly or indirectly for avoiding over-accumulation of excess Na+ and K+ ions in plants, and contributes to salt tolerance
      Title: Disruption of RCI2A leads to over-accumulation of Na+ and increased salt sensitivity in Arabidopsis thaliana plants.
    Submit: New GeneRIF Correction

    General gene information

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    NM_111462.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within hyperosmotic salinity response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within hyperosmotic salinity response TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Low temperature and salt responsive protein family
    NP_187239.1
    • RARE-COLD-INDUCIBLE 2A (RCI2A); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT3G05890.1); Has 1394 Blast hits to 1394 proteins in 470 species: Archae - 0; Bacteria - 656; Metazoa - 39; Fungi - 282; Plants - 382; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1755497..1756924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111462.2 → NP_187239.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187239.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZNQ7
      UniProtKB/TrEMBL
      A0A178V7D5
      Conserved Domains (1) summary
      pfam01679
      Location:5 → 52
      Pmp3; Proteolipid membrane potential modulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZNQ7.1

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