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    UBQ8 ubiquitin 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820137, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBQ8
    Official Full Name
    ubiquitin 8
    Primary source
    TAIR:AT3G09790
    Locus tag
    AT3G09790
    See related
    Araport:AT3G09790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F8.38; ubiquitin 8
    Summary
    encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.
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    Genomic context

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    See UBQ8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (3003862..3006250, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene CRINKLY4 related 1 Neighboring gene SNARE-like superfamily protein Neighboring gene isocitrate dehydrogenase VI Neighboring gene adenosine kinase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salicylic acid signaling controls the maturation and localization of the arabidopsis defense protein ACCELERATED CELL DEATH6. Zhang Z, et al. Mol Plant, 2014 Aug. PMID 24923602, Free PMC Article
    2. Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Callis J, et al. Genetics, 1995 Feb. PMID 7713442, Free PMC Article
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337841.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in intracellular anatomical structure TAS
    Traceable Author Statement
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ubiquitin 8
    NP_001319513.1
    • ubiquitin 8 (UBQ8); INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: cell wall, intracellular, vacuole; EXPRESSED IN: guard cell, juvenile leaf, trichome; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 39057 Blast hits to 7018 proteins in 718 species: Archae - 0; Bacteria - 147; Metazoa - 16312; Fungi - 4980; Plants - 8397; Viruses - 1303; Other Eukaryotes - 7918 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3003862..3006250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111814.2 → NP_566357.1  ubiquitin 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566357.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39256
      UniProtKB/TrEMBL
      A0A178VJQ5, A0A5S9XAJ1
      Conserved Domains (2) summary
      cd01803
      Location:79 → 154
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      cl28922
      Location:552 → 625
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. NM_001337841.1 → NP_001319513.1  ubiquitin 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39256
      UniProtKB/TrEMBL
      A0A178VJQ5, A0A5S9XAJ1
      Conserved Domains (2) summary
      cd01803
      Location:79 → 154
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      cl28922
      Location:552 → 625
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39256.1

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