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    GATA15 GATA transcription factor 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819859, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATA15
    Official Full Name
    GATA transcription factor 15
    Primary source
    TAIR:AT3G06740
    Locus tag
    AT3G06740
    See related
    Araport:AT3G06740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GATA transcription factor 15
    Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
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    Genomic context

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    See GATA15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (2126312..2127467)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase Neighboring gene importin alpha isoform 1 Neighboring gene Thioredoxin z Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    2. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111554.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA transcription factor 15
    NP_566290.1
    • GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2126312..2127467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111554.5 → NP_566290.1  GATA transcription factor 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566290.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LG10, Q8VZR1, Q9M7Y0
      UniProtKB/TrEMBL
      A0A178VA36, A0A5S9XA49
      Conserved Domains (2) summary
      smart00401
      Location:41 → 77
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam00320
      Location:43 → 77
      GATA; GATA zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LG10.2

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