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    MYB4R1 myb domain protein 4r1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821335, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB4R1
    Official Full Name
    myb domain protein 4r1
    Primary source
    TAIR:AT3G18100
    Locus tag
    AT3G18100
    See related
    Araport:AT3G18100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB4R1; myb domain protein 4r1; myb domain protein 4R1
    Summary
    Member of the R2R3 transcription factor gene family.
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    Genomic context

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    See MYB4R1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (6200524..6204752)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene B-S glucosidase 44 Neighboring gene nuclear RNA polymerase D2B Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene receptor for activated C kinase 1C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202993.1
    NM_001338329.1
    NM_112692.3
    NM_180276.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 4r1
    NP_001189922.1
    • myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2).
    NP_566597.1
    • myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2); Has 22862 Blast hits to 8555 proteins in 571 species: Archae - 0; Bacteria - 1576; Metazoa - 2254; Fungi - 1468; Plants - 12920; Viruses - 9; Other Eukaryotes - 4635 (source: NCBI BLink).
    NP_850607.1
    • myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2); Has 21136 Blast hits to 7985 proteins in 535 species: Archae - 0; Bacteria - 6; Metazoa - 2214; Fungi - 1422; Plants - 12869; Viruses - 9; Other Eukaryotes - 4616 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6200524..6204752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202993.1 → NP_001189922.1  myb domain protein 4r1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189922.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XDK9, F4J7J5
      Conserved Domains (4) summary
      smart00717
      Location:447 → 495
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:449 → 493
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00249
      Location:550 → 594
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam13921
      Location:501 → 561
      Myb_DNA-bind_6; Myb-like DNA-binding domain

    2. NM_001338329.1 → NP_001327710.1  myb domain protein 4r1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT55, A0A654F8C1

    3. NM_112692.3 → NP_566597.1  myb domain protein 4r1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566597.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCJ2, A0A384LQA7, A0A654F8C1, Q9LV31
      Conserved Domains (4) summary
      smart00717
      Location:495 → 543
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:497 → 541
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00249
      Location:598 → 642
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam13921
      Location:549 → 609
      Myb_DNA-bind_6; Myb-like DNA-binding domain

    4. NM_180276.2 → NP_850607.1  myb domain protein 4r1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850607.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J7J6
      Conserved Domains (3) summary
      smart00717
      Location:282 → 330
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      COG5147
      Location:333 → 429
      REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
      pfam13921
      Location:232 → 293
      Myb_DNA-bind_6; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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