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    zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821674, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc ion binding protein
    Primary source
    TAIR:AT3G21210
    Locus tag
    AT3G21210
    See related
    Araport:AT3G21210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (7437964..7440826, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene autoinhibited Ca(2+)-ATPase 9 Neighboring gene O-fucosyltransferase family protein Neighboring gene ncRNA Neighboring gene proton gradient regulation 7 Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene MAP kinase kinase 5 Neighboring gene 4-coumarate:CoA ligase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis are both bifunctional and interact with the catalytic and nucleotide-binding domains of pyruvate, orthophosphate dikinase. Astley HM, et al. Plant J, 2011 Dec. PMID 21883547
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113016.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc ion binding protein
    NP_188758.2
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway, response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G34480.1); Has 2127 Blast hits to 1070 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7437964..7440826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113016.4 → NP_188758.2  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188758.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F981, Q84R08, Q9LU38
      Conserved Domains (2) summary
      pfam00582
      Location:15 → 132
      Usp; Universal stress protein family
      pfam03107
      Location:426 → 474
      C1_2; C1 domain
    Nucleotide Protein
    Heading Accession and Version

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