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    transcription factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820717, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor-like protein
    Primary source
    TAIR:AT3G14880
    Locus tag
    AT3G14880
    See related
    Araport:AT3G14880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (5006526..5008037)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NHL domain-containing protein Neighboring gene hypothetical protein (DUF641) Neighboring gene phosphoesterase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125156.2
    NM_112350.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor-like protein
    NP_001118628.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_188106.2
    • BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 560 Blast hits to 560 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5006526..5008037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112350.3 → NP_188106.2  transcription factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188106.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKW2, A0A384KNW4, Q9LKB6
      Conserved Domains (1) summary
      pfam14144
      Location:24 → 104
      DOG1; Seed dormancy control

    2. NM_001125156.2 → NP_001118628.1  transcription factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118628.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EKS8, Q4PSP3
      Conserved Domains (1) summary
      pfam14144
      Location:24 → 104
      DOG1; Seed dormancy control
    Nucleotide Protein
    Heading Accession and Version

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