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    Protease-associated (PA) RING/U-box zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826540, updated on 18-Sep-2024

    Summary

    Official Full Name
    Protease-associated (PA) RING/U-box zinc finger family protein
    Primary source
    TAIR:AT4G09560
    Locus tag
    AT4G09560
    See related
    Araport:AT4G09560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15G18.20; T15G18_20
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (6040944..6043849, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis related family protein Neighboring gene AtGCP3 interacting protein 1 Neighboring gene pseudo Neighboring gene calcium-dependent protein kinase 4 Neighboring gene SNARE associated Golgi protein family

    General gene information

    NM_117024.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Protease-associated (PA) RING/U-box zinc finger family protein
    NP_192694.2
    • Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8638 Blast hits to 8590 proteins in 307 species: Archae - 0; Bacteria - 82; Metazoa - 2131; Fungi - 686; Plants - 4708; Viruses - 16; Other Eukaryotes - 1015 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6040944..6043849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117024.4NP_192694.2  Protease-associated (PA) RING/U-box zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192694.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPW5, Q9M0N7
      UniProtKB/TrEMBL
      A0A178UU31, A0A5S9XR10, A0A654FMK8
      Conserved Domains (2) summary
      cd02123
      Location:19163
      PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
      pfam13639
      Location:234276
      zf-RING_2; Ring finger domain