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    PQ-loop repeat family protein / transmembrane family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827756, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PQ-loop repeat family protein / transmembrane family protein
    Primary source
    TAIR:AT4G20100
    Locus tag
    AT4G20100
    See related
    Araport:AT4G20100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1C12.1
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (10873999..10874865, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene hypothetical protein (DUF626) Neighboring gene VACUOLAR SORTING RECEPTOR 7 Neighboring gene tRNA-Thr Neighboring gene plastid transcriptionally active 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    PQ-loop repeat family protein / transmembrane family protein
    NP_193743.1
    • PQ-loop repeat family protein / transmembrane family protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 798 Blast hits to 659 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 485; Plants - 115; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10873999..10874865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118129.1 → NP_193743.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UX92, A0A654FR25, O49437
      Conserved Domains (1) summary
      pfam04193
      Location:6 → 66
      PQ-loop; PQ loop repeat
    Nucleotide Protein
    Heading Accession and Version

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