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    SSN2 zinc finger SWIM domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829537, updated on 18-Sep-2024

    Summary

    Official Symbol
    SSN2
    Official Full Name
    zinc finger SWIM domain protein
    Primary source
    TAIR:AT4G33925
    Locus tag
    AT4G33925
    See related
    Araport:AT4G33925
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    suppressor of sni1 2
    Summary
    Encodes SSN2 (suppressor of sni1 2), a suppressor of SNI1 (AT4G18470). SSN2 contains a SWIM (SWI2/SNF2 and MuDR) domain found in a variety of prokaryotic and eukaryotic proteins. Involved in plant immune response and homologous recombination.
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    Genomic context

    See SSN2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (16263036..16264226)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene Cupredoxin superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene ARM repeat superfamily protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001160814.1
    NM_119552.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    zinc finger SWIM domain protein
    NP_001154286.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; Has 106 Blast hits to 106 proteins in 53 species: Archae - 8; Bacteria - 0; Metazoa - 47; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_567942.1
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16263036..16264226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119552.3NP_567942.1  zinc finger SWIM domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567942.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4E1, A0A5S9XYF2, Q147J4, Q8LCX0
      Conserved Domains (1) summary
      COG5431
      Location:37132
      COG5431; Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only]
    2. NM_001160814.1NP_001154286.1  zinc finger SWIM domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154286.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XYF2, F4JJV9, Q8LCX0
      Conserved Domains (1) summary
      COG5431
      Location:37121
      COG5431; Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only]