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    Class II aaRS and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823604, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Class II aaRS and biotin synthetases superfamily protein
    Primary source
    TAIR:AT3G44740
    Locus tag
    AT3G44740
    See related
    Araport:AT3G44740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (16295853..16297970, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene kinesin-like protein 1 Neighboring gene PHYTOSULFOKINE 3 PRECURSOR Neighboring gene histone deacetylase 3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339173.1
    NM_001339174.1
    NM_001339175.1
    NM_001339176.1
    NM_114343.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Class II aaRS and biotin synthetases superfamily protein
    NP_001319685.1
    • Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 3168 Blast hits to 2607 proteins in 995 species: Archae - 349; Bacteria - 1331; Metazoa - 339; Fungi - 293; Plants - 132; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16295853..16297970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339173.1 → NP_001319685.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J376

    2. NM_114343.6 → NP_190060.5  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190060.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J376
      Conserved Domains (1) summary
      cl00268
      Location:87 → 226
      class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...

    3. NM_001339174.1 → NP_001326391.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP49

    4. NM_001339175.1 → NP_001326390.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J376

    5. NM_001339176.1 → NP_001326392.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J376
    Nucleotide Protein
    Heading Accession and Version

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