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    NRT2.6 high affinity nitrate transporter 2.6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823641, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NRT2.6
    Official Full Name
    high affinity nitrate transporter 2.6
    Primary source
    TAIR:AT3G45060
    Locus tag
    AT3G45060
    See related
    Araport:AT3G45060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6; ATNRT2.6; high affinity nitrate transporter 2.6
    Summary
    member of High affinity nitrate transporter family
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    Genomic context

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    See NRT2.6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (16477561..16479559, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphatidate cytidylyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the Nrt2.6 gene in Arabidopsis thaliana: a link with plant response to biotic and abiotic stress. Dechorgnat J, et al. PLoS One, 2012. PMID 22880003, Free PMC Article
    2. The NRT2.5 and NRT2.6 genes are involved in growth promotion of Arabidopsis by the plant growth-promoting rhizobacterium (PGPR) strain Phyllobacterium brassicacearum STM196. Kechid M, et al. New Phytol, 2013 Apr. PMID 23398541
    3. Nitrate transport capacity of the Arabidopsis thaliana NRT2 family members and their interactions with AtNAR2.1. Kotur Z, et al. New Phytol, 2012 May. PMID 22432443
    4. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NRT2.5 and NRT2.6, which are preferentially expressed in leaves, play an essential role in plant growth promotion by the rhizospheric bacterium STM196.
      Title: The NRT2.5 and NRT2.6 genes are involved in growth promotion of Arabidopsis by the plant growth-promoting rhizobacterium (PGPR) strain Phyllobacterium brassicacearum STM196.
    2. A correlation was found between NRT2.6 expression and ROS species accumulation in response to infection by E. amylovora and treatment with the redox-active herbicide methyl viologen.
      Title: Characterization of the Nrt2.6 gene in Arabidopsis thaliana: a link with plant response to biotic and abiotic stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_114375.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nitrate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nitrate transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    high affinity nitrate transporter 2.6
    NP_190092.1
    • high affinity nitrate transporter 2.6 (NRT2.6); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2.3 (TAIR:AT5G60780.1); Has 6705 Blast hits to 6593 proteins in 1499 species: Archae - 65; Bacteria - 5860; Metazoa - 18; Fungi - 311; Plants - 270; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16477561..16479559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114375.5 → NP_190092.1  high affinity nitrate transporter 2.6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190092.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXH0
      UniProtKB/TrEMBL
      A0A178V6D4, A0A5S9XI32, A0A7G2EQC4
      Conserved Domains (1) summary
      PLN00028
      Location:38 → 516
      PLN00028; nitrate transmembrane transporter; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXH0.1

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