U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    E3 UFM1-protein ligase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823767, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    E3 UFM1-protein ligase-like protein
    Primary source
    TAIR:AT3G46220
    Locus tag
    AT3G46220
    See related
    Araport:AT3G46220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (16979048..16984177)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ribosomal protein S5 domain 2-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene heat shock protein 17.4 Neighboring gene ER protein carbohydrate-binding protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001203092.1
    NM_001339243.1
    NM_114491.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UFM1 ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ufmylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 UFM1-protein ligase-like protein
    NP_001190020.1
    • unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611).
    NP_001190021.1
    • unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611).
    NP_566883.4
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16979048..16984177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203091.1 → NP_001190020.1  E3 UFM1-protein ligase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190020.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6K0, A0A5S9XIK8, F4J7Z6
      Conserved Domains (1) summary
      PLN03083
      Location:1 → 809
      PLN03083; E3 UFM1-protein ligase 1 homolog; Provisional

    2. NM_001203092.1 → NP_001190021.1  E3 UFM1-protein ligase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190021.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6K0, A0A5S9XIK8, F4J7Z8
      Conserved Domains (1) summary
      PLN03083
      Location:1 → 785
      PLN03083; E3 UFM1-protein ligase 1 homolog; Provisional

    3. NM_114491.7 → NP_566883.4  E3 UFM1-protein ligase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566883.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX73
      UniProtKB/TrEMBL
      A0A178V6K0, A0A5S9XIK8, A0A654FHE5
      Conserved Domains (1) summary
      PLN03083
      Location:1 → 801
      PLN03083; E3 UFM1-protein ligase 1 homolog; Provisional

    4. NM_001339243.1 → NP_001327855.1  E3 UFM1-protein ligase-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTL2, A0A7G2ERN0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LX73.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.