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    Sodium Bile acid symporter family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824782, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sodium Bile acid symporter family
    Primary source
    TAIR:AT3G56160
    Locus tag
    AT3G56160
    See related
    Araport:AT3G56160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (20837365..20841734, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DUF399 family protein, putative (DUF399 and DUF3411) Neighboring gene eukaryotic translation initiation factor 3C Neighboring gene Ca-2+ dependent nuclease Neighboring gene LURP-one-like protein (DUF567) Neighboring gene alpha-soluble NSF attachment protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339776.1
    NM_115474.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 

    General protein information

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    Preferred Names
    Sodium Bile acid symporter family
    NP_191175.2
    • Sodium Bile acid symporter family; FUNCTIONS IN: bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); Has 3096 Blast hits to 3087 proteins in 1049 species: Archae - 42; Bacteria - 2090; Metazoa - 108; Fungi - 101; Plants - 149; Viruses - 0; Other Eukaryotes - 606 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20837365..20841734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339774.1 → NP_001326519.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBA0, A0A1I9LPI7
      Conserved Domains (1) summary
      cl19217
      Location:81 → 397
      SBF; Sodium Bile acid symporter family

    2. NM_001339773.1 → NP_001326518.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBA0, A0A1I9LPI6
      Conserved Domains (1) summary
      cl19217
      Location:81 → 327
      SBF; Sodium Bile acid symporter family

    3. NM_001339775.1 → NP_001326516.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPI4
      Conserved Domains (1) summary
      cl19217
      Location:81 → 254
      SBF; Sodium Bile acid symporter family

    4. NM_115474.3 → NP_191175.2  Sodium Bile acid symporter family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191175.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IZC4, Q9LYM5
      UniProtKB/TrEMBL
      A0A178VBA0, A0A654FG92
      Conserved Domains (1) summary
      cl19217
      Location:108 → 424
      SBF; Sodium Bile acid symporter family

    5. NM_001339776.1 → NP_001326517.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPI5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IZC4.1

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