PIA1 Ankyrin repeat family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: PIA1
Official Full Name: Ankyrin repeat family protein
Primary source: TAIR:AT5G07840
Locus tag: AT5G07840
See related: Araport:AT5G07840
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F13G24.40; phytochrome interacting ankyrin-repeat protein 1
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Genomic context

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See PIA1 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 2

Sequence:: Chromosome: 5; NC_003076.8 (2506656..2508373, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

Miscellaneous features

Loc: c2507658-2507542 AT5G07840.uORF1

NM_120866.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables phytochrome binding	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: Ankyrin repeat family protein

NP_568184.1

Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G61230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

2506656..2508373 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_120866.1 → NP_568184.1 Ankyrin repeat family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568184.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9FF09, Q9SDA0

UniProtKB/TrEMBL

A0A178UK09, A0A5S9Y357

Conserved Domains (2) summary

sd00045
Location:30 → 61

ANK; ANK repeat [structural motif]

pfam12796
Location:35 → 127

Ank_2; Ankyrin repeats (3 copies)