EML3 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: EML3
Official Full Name: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Primary source: TAIR:AT5G13020
Locus tag: AT5G13020
See related: Araport:AT5G13020
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtEML3; EMSY-like 3; T19L5.3
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See EML3 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 12

Sequence:: Chromosome: 5; NC_003076.8 (4129154..4133023, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

necessary for post-fertilization seed development and prevent fertilization-independent seed formation
Title: Arabidopsis EMSY-like (EML) histone readers are necessary for post-fertilization seed development, but prevent fertilization-independent seed formation.
Consistent with histone reader activity, EML1 and EML3 associate with nucleosomes and with Cabbage leaf curl virus chromatin, suggesting a direct impact on pathogenesis. EML1 and EML3 bind peptides containing histone H3 lysine 36 (H3K36), a posttranslational modification usually associated with active gene expression.
Title: Arabidopsis Histone Reader EMSY-LIKE 1 Binds H3K36 and Suppresses Geminivirus Infection.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

NM_001343254.1

Supported by ESTs:

NM_001343255.1

Supported by ESTs:

NM_121305.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables chromatin binding	IDA Inferred from Direct Assay more info	PubMed
enables nucleosome binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in defense response to fungus	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein

NP_196806.2

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT) domain-containing protein (TAIR:AT2G44440.1); Has 417 Blast hits to 397 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 4; Plants - 307; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

4129154..4133023 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_121305.4 → NP_196806.2 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_196806.2

Status: REVIEWED

UniProtKB/Swiss-Prot

F4K2F0, Q9LXT7

UniProtKB/TrEMBL

A0A178UIH0, A0A5S9Y3N0

Conserved Domains (2) summary

pfam03735
Location:53 → 120

ENT; ENT domain

cd20404
Location:223 → 273

Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
NM_001343254.1 → NP_001332263.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BGG0

Conserved Domains (2) summary

pfam03735
Location:53 → 120

ENT; ENT domain

cd20404
Location:223 → 268

Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
NM_001343255.1 → NP_001332264.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BGG3

Conserved Domains (2) summary

pfam03735
Location:53 → 120

ENT; ENT domain

cd20404
Location:223 → 273

Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins