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    F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833921, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box family protein
    Primary source
    TAIR:AT5G39250
    Locus tag
    AT5G39250
    See related
    Araport:AT5G39250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K3K3.16; K3K3_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (15724477..15727206)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transcription factor UPBEAT-like protein Neighboring gene pseudo Neighboring gene expansin A21 Neighboring gene expansin A22 Neighboring gene expansin A23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_123287.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein
    NP_198741.1
    • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 68 Blast hits to 68 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15724477..15727206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344286.1 → NP_001332049.1  F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FL82
      UniProtKB/TrEMBL
      A0A178UQX6, A0A5S9Y9A7, A0A654G6I4
      Conserved Domains (1) summary
      pfam12937
      Location:4 → 43
      F-box-like

    2. NM_123287.4 → NP_198741.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198741.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FL82
      UniProtKB/TrEMBL
      A0A178UQX6, A0A5S9Y9A7, A0A654G6I4
      Conserved Domains (1) summary
      pfam12937
      Location:4 → 43
      F-box-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FL82.1

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