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    Integral membrane HPP family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836393, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Integral membrane HPP family protein
    Primary source
    TAIR:AT5G62720
    Locus tag
    AT5G62720
    See related
    Araport:AT5G62720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQB2.4; MQB2_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25191402..25195071)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tubulin beta chain 3 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Major facilitator superfamily protein Neighboring gene SPFH/Band 7/PHB domain-containing membrane-associated protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nitrite transport activity of a novel HPP family protein conserved in cyanobacteria and chloroplasts. Maeda S, et al. Plant Cell Physiol, 2014 Jul. PMID 24904028
    2. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_125667.3
    NM_203254.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nitrate transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within nitrate transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane HDA PubMed 

    General protein information

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    Preferred Names
    Integral membrane HPP family protein
    NP_201078.1
    • Integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT3G47980.1); Has 1507 Blast hits to 1507 proteins in 452 species: Archae - 0; Bacteria - 819; Metazoa - 0; Fungi - 49; Plants - 59; Viruses - 0; Other Eukaryotes - 580 (source: NCBI BLink).
    NP_974983.1
    • Integral membrane HPP family protein; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT3G47980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25191402..25195071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125667.3 → NP_201078.1  Integral membrane HPP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201078.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPA4, Q8GZ51
      Conserved Domains (1) summary
      pfam04982
      Location:125 → 227
      HPP; HPP family

    2. NM_203254.2 → NP_974983.1  Integral membrane HPP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974983.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPA4, F4K7S5
      Conserved Domains (1) summary
      pfam04982
      Location:125 → 195
      HPP; HPP family
    Nucleotide Protein
    Heading Accession and Version

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