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    ARI15 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836496, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARI15
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT5G63760
    Locus tag
    AT5G63760
    See related
    Araport:AT5G63760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS ARIADNE 15; ARIADNE 15; ATARI15; MBK5.24; MBK5_24
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    Genomic context

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    See ARI15 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (25515662..25517891, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene diacylglycerol kinase 2 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene NAC domain containing protein 102

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345608.1
    NM_001345609.1
    NM_125771.3
    NM_203258.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_201181.2
    • ARIADNE 15 (ARI15); FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G63750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974987.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G63750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25515662..25517891 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203258.2 → NP_974987.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974987.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84RQ8, Q9FFN8
      UniProtKB/TrEMBL
      A0A5S9YGZ9, A0A654GDS6
      Conserved Domains (2) summary
      smart00647
      Location:106 → 174
      IBR; In Between Ring fingers
      cl17238
      Location:54 → 88
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001345608.1 → NP_001332429.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84RQ8, Q9FFN8
      UniProtKB/TrEMBL
      A0A5S9YGZ9, A0A654GDS6
      Conserved Domains (2) summary
      smart00647
      Location:106 → 174
      IBR; In Between Ring fingers
      cl17238
      Location:54 → 88
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_001345609.1 → NP_001332430.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGW6

    4. NM_125771.3 → NP_201181.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201181.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84RQ8, Q9FFN8
      UniProtKB/TrEMBL
      A0A5S9YGZ9, A0A654GDS6
      Conserved Domains (2) summary
      smart00647
      Location:106 → 174
      IBR; In Between Ring fingers
      cl17238
      Location:54 → 88
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84RQ8.1

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