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    dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836538, updated on 18-Sep-2024

    Summary

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    Official Full Name
    dentin sialophosphoprotein-like protein
    Primary source
    TAIR:AT5G64170
    Locus tag
    AT5G64170
    See related
    Araport:AT5G64170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LNK1; MHJ24.1; MHJ24_1; night light-inducible and clock-regulated 1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (25672466..25676823, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S28 Neighboring gene RNA methyltransferase family protein Neighboring gene ncRNA Neighboring gene plant/protein Neighboring gene tropomyosin Neighboring gene neuronal PAS domain protein Neighboring gene serine/arginine-rich splicing factor-like protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The LNK1 night light-inducible and clock-regulated gene is induced also in response to warm-night through the circadian clock nighttime repressor in Arabidopsis thaliana. Mizuno T, et al. Plant Signal Behav, 2014. PMID 24690904, Free PMC Article
    2. LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Rugnone ML, et al. Proc Natl Acad Sci U S A, 2013 Jul 16. PMID 23818596, Free PMC Article
    3. Targeted Recruitment of the Basal Transcriptional Machinery by LNK Clock Components Controls the Circadian Rhythms of Nascent RNAs in Arabidopsis. Ma Y, et al. Plant Cell, 2018 Apr. PMID 29618629, Free PMC Article
    4. Time-dependent sequestration of RVE8 by LNK proteins shapes the diurnal oscillation of anthocyanin biosynthesis. Pérez-García P, et al. Proc Natl Acad Sci U S A, 2015 Apr 21. PMID 25848001, Free PMC Article
    5. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Zhou M, et al. Plant Physiol, 2017 Jul. PMID 28483877, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LNK1 and LNK2 act as transcriptional corepressors necessary for expression of the phenylpropanoids biosynthesis gene C4H through recruitment to its promoter via interaction with MYB3.
      Title: LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    2. LNK1 is a transcriptional coactivator necessary for expression of the clock genes PRR5 and TOC1 through recruitment to their promoters via interaction with bona fide DNA binding proteins such as RVE4 and RVE8.
      Title: LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator.
    3. This study defines a switch in the regulatory activity of RVE8-LNK interaction, from a synergic coactivating role of evening-expressed clock genes to a repressive antagonistic function modulating anthocyanin biosynthesis around midday.[LNK1]
      Title: Time-dependent sequestration of RVE8 by LNK proteins shapes the diurnal oscillation of anthocyanin biosynthesis.
    4. LNK1 night light-inducible and clock-controlled gene, which actually has a robust peak at daytime, is induced also by warm-night through the EC nighttime repressor in a manner very similar to PRR7. [LNK1]
      Title: The LNK1 night light-inducible and clock-regulated gene is induced also in response to warm-night through the circadian clock nighttime repressor in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085324.2
    NM_001345619.1
    NM_125813.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coregulator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription elongation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within circadian regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within entrainment of circadian clock IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    dentin sialophosphoprotein-like protein
    NP_001078793.1
    • dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54500.2); Has 181 Blast hits to 169 proteins in 40 species: Archae - 2; Bacteria - 18; Metazoa - 17; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    NP_201222.1
    • dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25672466..25676823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125813.5 → NP_201222.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201222.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YGV3

    2. NM_001345619.1 → NP_001330478.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQN2, B9DGM4, Q9FMI3
      UniProtKB/TrEMBL
      A0A5S9YGV3, A0A654GEY7

    3. NM_001085324.2 → NP_001078793.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078793.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQN2, B9DGM4, Q9FMI3
      UniProtKB/TrEMBL
      A0A5S9YGV3, A0A654GEY7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MQN2.1

    Gene LinkOut

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