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    RNA polymerase III RPC4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830797, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase III RPC4
    Primary source
    TAIR:AT5G09380
    Locus tag
    AT5G09380
    See related
    Araport:AT5G09380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5E8.180; T5E8_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (2911177..2913324, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene laccase 14 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene CD2-binding protein-like protein Neighboring gene K+ uptake permease 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pollen-expressed transcription factor 2 encodes a novel plant-specific TFIIB-related protein that is required for pollen germination and embryogenesis in Arabidopsis. Niu QK, et al. Mol Plant, 2013 Jul. PMID 23713077
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase III RPC4
    NP_001318517.1
    • RNA polymerase III RPC4; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: RNA polymerase III RPC4 (TAIR:AT4G25180.1); Has 234 Blast hits to 234 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 41; Plants - 59; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2911177..2913324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343048.1 → NP_001332087.1  RNA polymerase III RPC4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQ90, A0A384KIZ2, Q9FY77
      Conserved Domains (1) summary
      pfam05132
      Location:156 → 262
      RNA_pol_Rpc4; RNA polymerase III RPC4

    2. NM_001343049.1 → NP_001332088.1  RNA polymerase III RPC4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFX0

    3. NM_001343047.1 → NP_001318517.1  RNA polymerase III RPC4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KCL0
    Nucleotide Protein
    Heading Accession and Version

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