U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    cotton fiber protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827082, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    cotton fiber protein
    Primary source
    TAIR:AT4G14380
    Locus tag
    AT4G14380
    See related
    Araport:AT4G14380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3230W; FCAALL.187
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (8285578..8286772)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene histone acetyltransferase subunit NuA4-domain protein Neighboring gene Ankyrin repeat family protein Neighboring gene ankyrin repeat family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_117516.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cotton fiber protein
    NP_193174.1
    • unknown protein; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8285578..8286772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117516.4 → NP_193174.1  cotton fiber protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193174.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O23294, Q8GYU9
      Conserved Domains (1) summary
      pfam05553
      Location:165 → 197
      DUF761; Cotton fibre expressed protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools