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    PPR336 pentatricopeptide repeat 336 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842484, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPR336
    Official Full Name
    pentatricopeptide repeat 336
    Primary source
    TAIR:AT1G61870
    Locus tag
    AT1G61870
    See related
    Araport:AT1G61870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8K4.8; F8K4_8; pentatricopeptide repeat 336
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    Genomic context

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    See PPR336 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (22864951..22866666, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phospholipase A I-like protein Neighboring gene Protein kinase superfamily protein Neighboring gene tRNA-Trp Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CDKB1;1 forms a functional complex with CYCA2;3 to suppress endocycle onset. Boudolf V, et al. Plant Physiol, 2009 Jul. PMID 19458112, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104869.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide repeat 336
    NP_564786.1
    • pentatricopeptide repeat 336 (PPR336); LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G11630.1); Has 31000 Blast hits to 9550 proteins in 270 species: Archae - 4; Bacteria - 23; Metazoa - 297; Fungi - 351; Plants - 29494; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22864951..22866666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104869.3 → NP_564786.1  pentatricopeptide repeat 336 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564786.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80694, Q8LE47
      Conserved Domains (3) summary
      PLN03218
      Location:127 → 349
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:259 → 286
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:290 → 339
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LE47.2

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