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    FAD-dependent oxidoreductase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816994, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FAD-dependent oxidoreductase family protein
    Primary source
    TAIR:AT2G24580
    Locus tag
    AT2G24580
    See related
    Araport:AT2G24580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25P17.12; F25P17_12
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (10444479..10446434, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene WRKY DNA-binding protein 17 Neighboring gene RNA recognition motif and CCHC-type zinc finger domains containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and metabolic function of a peroxisomal sarcosine and pipecolate oxidase from Arabidopsis. Goyer A, et al. J Biol Chem, 2004 Apr 23. PMID 14766747
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128019.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sarcosine oxidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAD-dependent oxidoreductase family protein
    NP_180034.1
    • FAD-dependent oxidoreductase family protein; FUNCTIONS IN: sarcosine oxidase activity; INVOLVED IN: tetrahydrofolate metabolic process, oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Sarcosine oxidase, monomeric (InterPro:IPR006281); Has 4031 Blast hits to 4005 proteins in 935 species: Archae - 135; Bacteria - 2670; Metazoa - 148; Fungi - 247; Plants - 60; Viruses - 0; Other Eukaryotes - 771 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10444479..10446434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128019.4 → NP_180034.1  FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180034.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJA7
      UniProtKB/TrEMBL
      A0A178VQD5, A0A5S9X114, Q53YK5
      Conserved Domains (1) summary
      TIGR01377
      Location:9 → 399
      soxA_mon; sarcosine oxidase, monomeric form
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJA7.1

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