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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837991, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT1G14300
    Locus tag
    AT1G14300
    See related
    Araport:AT1G14300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14L17.6; F14L17_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (4882336..4884818, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phytochrome kinase substrate 2 Neighboring gene sphingoid base hydroxylase 2 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Ribosomal protein L16p/L10e family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198063.1
    NM_101296.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001184992.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206).
    NP_172882.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206), Armadillo-type fold (InterPro:IPR016024); Has 331 Blast hits to 331 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 149; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4882336..4884818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101296.5 → NP_172882.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172882.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WED0, Q8GYU7, Q9M9T2
      Conserved Domains (3) summary
      sd00043
      Location:5 → 30
      ARM; armadillo repeat [structural motif]
      pfam04063
      Location:94 → 270
      DUF383; Domain of unknown function (DUF383)
      pfam04064
      Location:275 → 329
      DUF384; Domain of unknown function (DUF384)

    2. NM_001198063.1 → NP_001184992.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184992.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HUI7, Q8GYU7
      Conserved Domains (4) summary
      cd00020
      Location:5 → 115
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam04063
      Location:95 → 270
      DUF383; Domain of unknown function (DUF383)
      pfam04064
      Location:315 → 366
      DUF384; Domain of unknown function (DUF384)
      sd00043
      Location:5 → 30
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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