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    Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841228, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectin lyase-like superfamily protein
    Primary source
    TAIR:AT1G48100
    Locus tag
    AT1G48100
    See related
    Araport:AT1G48100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21D18.18; F21D18_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17766738..17769951)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene evolutionarily conserved C-terminal region 7 Neighboring gene serine/threonine-protein phosphatase 7 long form-like protein Neighboring gene 1-cysteine peroxiredoxin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. POLYGALACTURONASE INVOLVED IN EXPANSION3 Functions in Seedling Development, Rosette Growth, and Stomatal Dynamics in Arabidopsis thaliana. Rui Y, et al. Plant Cell, 2017 Oct. PMID 28974550, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_103706.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polygalacturonase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall modification involved in multidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Pectin lyase-like superfamily protein
    NP_175244.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G02460.1); Has 4526 Blast hits to 4502 proteins in 576 species: Archae - 8; Bacteria - 1381; Metazoa - 30; Fungi - 1439; Plants - 1518; Viruses - 5; Other Eukaryotes - 145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17766738..17769951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103706.4 → NP_175244.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175244.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q949Z1, Q94EH4, Q9LNG3
      UniProtKB/TrEMBL
      A0A5S9WJZ7, A0A654EH86, A0A7G2DW31
      Conserved Domains (1) summary
      cl19188
      Location:79 → 471
      PL-6; Polysaccharide Lyase Family 6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q949Z1.1

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