AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: AMP-dependent synthetase and ligase family protein
Primary source: TAIR:AT1G20490
Locus tag: AT1G20490
See related: Araport:AT1G20490
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F5M15.28; F5M15_28
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Sequence:: Chromosome: 1; NC_003070.9 (7097211..7099892, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001332446.1

Supported by ESTs:

NM_101899.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables 4-coumarate-CoA ligase activity	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: AMP-dependent synthetase and ligase family protein

NP_173473.2

AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

7097211..7099892 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_101899.4 → NP_173473.2 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173473.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WNE8, A0A1P8AV51

Conserved Domains (2) summary

pfam00501
Location:49 → 429

AMP-binding; AMP-binding enzyme

cl17068
Location:32 → 429

AFD_class_I; Adenylate forming domain, Class I superfamily
NM_001332446.1 → NP_001322801.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WNE8, A0A1P8AV51