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    filament-like protein (DUF869) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819691, updated on 18-Sep-2024

    Summary

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    Official Full Name
    filament-like protein (DUF869)
    Primary source
    TAIR:AT3G05270
    Locus tag
    AT3G05270
    See related
    Araport:AT3G05270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12H1.24; T12H1_24
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1500368..1503481, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Signal peptidase subunit Neighboring gene mitochondrial editing factor 19 Neighboring gene RING/U-box superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Integral membrane Yip1 family protein Neighboring gene peroxisomal adenine nucleotide carrier 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel coiled-coil proteins regulate exocyst association with cortical microtubules in xylem cells via the conserved oligomeric golgi-complex 2 protein. Oda Y, et al. Plant Cell Physiol, 2015 Feb. PMID 25541219
    2. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125107.2
    NM_111400.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of exocyst localization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with cortical microtubule plus-end IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    filament-like protein (DUF869)
    NP_001118579.1
    • Plant protein of unknown function (DUF869); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_187178.2
    • Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 124843 Blast hits to 65585 proteins in 3211 species: Archae - 1867; Bacteria - 22851; Metazoa - 56517; Fungi - 10971; Plants - 7183; Viruses - 508; Other Eukaryotes - 24946 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1500368..1503481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337574.1 → NP_001326801.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9MA92
      UniProtKB/TrEMBL
      A0A178VHW7, A0A5S9X9C7
      Conserved Domains (2) summary
      COG1196
      Location:329 → 532
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05911
      Location:76 → 256
      FPP; Filament-like plant protein, long coiled-coil

    2. NM_111400.3 → NP_187178.2  filament-like protein (DUF869) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187178.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9MA92
      UniProtKB/TrEMBL
      A0A178VHW7, A0A5S9X9C7
      Conserved Domains (2) summary
      COG1196
      Location:329 → 532
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05911
      Location:76 → 256
      FPP; Filament-like plant protein, long coiled-coil

    3. NM_001125107.2 → NP_001118579.1  filament-like protein (DUF869) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118579.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9MA92
      UniProtKB/TrEMBL
      A0A178VHW7, A0A5S9X9C7
      Conserved Domains (2) summary
      COG1196
      Location:329 → 532
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05911
      Location:76 → 256
      FPP; Filament-like plant protein, long coiled-coil
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MA92.2

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