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    agenet domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819830, updated on 18-Sep-2024

    Summary

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    Official Full Name
    agenet domain-containing protein
    Primary source
    TAIR:AT3G06520
    Locus tag
    AT3G06520
    See related
    Araport:AT3G06520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5E6.15; F5E6_15
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (2019849..2022102)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Plant neutral invertase family protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene Rab escort protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337661.1
    NM_111528.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain-containing protein
    NP_001319487.1
    • agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 523 Blast hits to 271 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2019849..2022102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337661.1 → NP_001319487.1  agenet domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAD1, Q9C8Z3

    2. NM_111528.2 → NP_187304.1  agenet domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187304.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAD1, Q9C8Z3
      Conserved Domains (2) summary
      smart00743
      Location:77 → 136
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:172 → 235
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

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