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    iqd32 IQ-domain 32 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838575, updated on 18-Sep-2024

    Summary

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    Official Symbol
    iqd32
    Official Full Name
    IQ-domain 32
    Primary source
    TAIR:AT1G19870
    Locus tag
    AT1G19870
    See related
    Araport:AT1G19870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F9.8; F6F9_8; IQ-domain 32; IQD32
    Summary
    Encodes a microtubule-associated protein.
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    Genomic context

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    See iqd32 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (6895009..6898818, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene male-gamete-specific histone H3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    4. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    5. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332417.1
    NM_101842.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast envelope HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    part_of microtubule associated complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    IQ-domain 32
    NP_564097.1
    • IQ-domain 32 (iqd32); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 9103 Blast hits to 6594 proteins in 683 species: Archae - 22; Bacteria - 1108; Metazoa - 3792; Fungi - 1037; Plants - 1107; Viruses - 33; Other Eukaryotes - 2004 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6895009..6898818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101842.5 → NP_564097.1  IQ-domain 32 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564097.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q570I0, Q8LFD0, Q8LPF6, Q9FXI5
      UniProtKB/TrEMBL
      A0A178WED9, A0A5S9V7Z5
      Conserved Domains (2) summary
      smart00015
      Location:215 → 234
      IQ; Calmodulin-binding motif
      pfam13178
      Location:703 → 790
      DUF4005; Protein of unknown function (DUF4005)

    2. NM_001332417.1 → NP_001320832.1  IQ-domain 32 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP22
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FXI5.3

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