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    YCF49-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828382, updated on 18-Sep-2024

    Summary

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    Official Full Name
    YCF49-like protein
    Primary source
    TAIR:AT4G22830
    Locus tag
    AT4G22830
    See related
    Araport:AT4G22830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H19.1
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (11990028..11991491, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene Sodium Bile acid symporter family Neighboring gene SNARE associated Golgi protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203874.1
    NM_118412.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YCF49-like protein
    NP_001190803.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634).
    NP_194014.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11990028..11991491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118412.4 → NP_194014.2  YCF49-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194014.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3E9, A0A5S9XVE8, Q8GWI3
      Conserved Domains (1) summary
      pfam10693
      Location:92 → 178
      DUF2499; Protein of unknown function (DUF2499)

    2. NM_001203874.1 → NP_001190803.1  YCF49-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190803.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XVE8, F4JMN0
      Conserved Domains (1) summary
      pfam10693
      Location:100 → 186
      DUF2499; Protein of unknown function (DUF2499)
    Nucleotide Protein
    Heading Accession and Version

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