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    Rhamnogalacturonate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829951, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rhamnogalacturonate lyase family protein
    Primary source
    TAIR:AT4G37950
    Locus tag
    AT4G37950
    See related
    Araport:AT4G37950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.70; F20D10_70
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (17844361..17849274)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene serine transhydroxymethyltransferase 1 Neighboring gene AGAMOUS-like 21 Neighboring gene cinnamyl alcohol dehydrogenase 6 Neighboring gene cinnamyl alcohol dehydrogenase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342465.1
    NM_119956.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables rhamnogalacturonan endolyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rhamnogalacturonate lyase family protein
    NP_195508.2
    • Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1); Has 315 Blast hits to 298 proteins in 69 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 92; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17844361..17849274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119956.4 → NP_195508.2  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195508.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V270, A0A384L9M5, A0A5S9XZZ7, Q84W85
      Conserved Domains (3) summary
      cd10316
      Location:372 → 470
      RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      pfam06045
      Location:38 → 244
      Rhamnogal_lyase; Rhamnogalacturonate lyase family
      pfam14683
      Location:482 → 672
      CBM-like; Polysaccharide lyase family 4, domain III

    2. NM_001342465.1 → NP_001329850.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V270, A0A384L9M5, A0A5S9XZZ7, Q84W85
      Conserved Domains (3) summary
      cd10316
      Location:372 → 470
      RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
      pfam06045
      Location:38 → 244
      Rhamnogal_lyase; Rhamnogalacturonate lyase family
      pfam14683
      Location:482 → 672
      CBM-like; Polysaccharide lyase family 4, domain III
    Nucleotide Protein
    Heading Accession and Version

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