EDA40 Zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: EDA40
Official Full Name: Zinc finger (C3HC4-type RING finger) family protein
Primary source: TAIR:AT4G37890
Locus tag: AT4G37890
See related: Araport:AT4G37890
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: embryo sac development arrest 40; F20D10.10; F20D10_10
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Genomic context

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See EDA40 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 2

Sequence:: Chromosome: 4; NC_003075.7 (17812698..17815095, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_119950.2

Supported by ESTs:

NM_179183.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within polar nucleus fusion	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: Zinc finger (C3HC4-type RING finger) family protein

NP_195502.2

embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 927 Blast hits to 854 proteins in 205 species: Archae - 0; Bacteria - 269; Metazoa - 39; Fungi - 123; Plants - 345; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

NP_849514.1

embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 1867 Blast hits to 1074 proteins in 263 species: Archae - 0; Bacteria - 369; Metazoa - 130; Fungi - 203; Plants - 355; Viruses - 0; Other Eukaryotes - 810 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

17812698..17815095 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_179183.2 → NP_849514.1 Zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_849514.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FWK3, F4JSV2

Conserved Domains (2) summary

pfam17123
Location:141 → 170

zf-RING_11; RING-like zinc finger

cl00057
Location:328 → 482

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
NM_119950.2 → NP_195502.2 Zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195502.2

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JSV3, Q8GYZ4, Q9SZJ1

UniProtKB/TrEMBL

A0A654FWK3

Conserved Domains (4) summary

pfam17123
Location:169 → 198

zf-RING_11; RING-like zinc finger

cd16448
Location:169 → 214

RING-H2; RING-H2 finger (C3H2C3-type) [structural motif]

cl00057
Location:356 → 510

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

cl25642
Location:630 → 728

DUF390; Protein of unknown function (DUF390)