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    Transmembrane amino acid transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829982, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transmembrane amino acid transporter family protein
    Primary source
    TAIR:AT4G38250
    Locus tag
    AT4G38250
    See related
    Araport:AT4G38250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22I13.20; F22I13_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (17935402..17937068)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycerol kinase Neighboring gene calcium-dependent protein kinase 26 Neighboring gene alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase Neighboring gene ncRNA Neighboring gene transport/golgi organization-like protein (DUF833) Neighboring gene galacturonosyltransferase 3 Neighboring gene integral membrane hemolysin-III-like protein Neighboring gene hemolysin-III related integral membrane protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional identification of AtAVT3, a family of vacuolar amino acid transporters, in Arabidopsis. Fujiki Y, et al. FEBS Lett, 2017 Jan. PMID 27925655
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtAVT3 family represents the long sought-for vacuolar amino acid exporters in plants.[AtAVT3C]
      Title: Functional identification of AtAVT3, a family of vacuolar amino acid transporters, in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119987.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables neutral L-amino acid transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neutral amino acid transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in vacuolar membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Transmembrane amino acid transporter family protein
    NP_195538.1
    • Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17935402..17937068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119987.3 → NP_195538.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195538.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAI4, Q9SVG0
      UniProtKB/TrEMBL
      A0A178UXJ1, A0A5S9Y005, A0A654FWQ2
      Conserved Domains (1) summary
      cl00456
      Location:34 → 429
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVG0.1

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