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    APL3 Glucose-1-phosphate adenylyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830076, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APL3
    Official Full Name
    Glucose-1-phosphate adenylyltransferase family protein
    Primary source
    TAIR:AT4G39210
    Locus tag
    AT4G39210
    See related
    Araport:AT4G39210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F8.110; T22F8_110
    Summary
    Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.
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    Genomic context

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    See APL3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (18259547..18263468)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene Ribosomal protein S25 family protein Neighboring gene Rer1 family protein Neighboring gene NmrA-like negative transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sugars and light/dark exposure trigger differential regulation of ADP-glucose pyrophosphorylase genes in Arabidopsis thaliana (thale cress). Sokolov LN, et al. Biochem J, 1998 Dec 15. PMID 9841881, Free PMC Article
    2. Molecular characterization of multiple cDNA clones for ADP-glucose pyrophosphorylase from Arabidopsis thaliana. Villand P, et al. Plant Mol Biol, 1993 Dec. PMID 8292792
    3. Differential pattern of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase-encoding genes. Crevillén P, et al. J Biol Chem, 2005 Mar 4. PMID 15598655
    4. Two Arabidopsis ADP-glucose pyrophosphorylase large subunits (APL1 and APL2) are catalytic. Ventriglia T, et al. Plant Physiol, 2008 Sep. PMID 18614708, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. patterns of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase
      Title: Differential pattern of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase-encoding genes.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001342527.1
    NM_120081.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    contributes_to glucose-1-phosphate adenylyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glucose-1-phosphate adenylyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in starch biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within starch biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glucose-1-phosphate adenylyltransferase family protein
    NP_195632.1
    • APL3; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Glucose-1-phosphate adenylyltransferase family protein (TAIR:AT2G21590.2); Has 8453 Blast hits to 8443 proteins in 1715 species: Archae - 406; Bacteria - 5407; Metazoa - 11; Fungi - 12; Plants - 1700; Viruses - 0; Other Eukaryotes - 917 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18259547..18263468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120081.2 → NP_195632.1  Glucose-1-phosphate adenylyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195632.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P55231, Q9ZR38
      UniProtKB/TrEMBL
      A0A178US50, A0A5S9Y0F3, A0A654FWW3
      Conserved Domains (1) summary
      PLN02241
      Location:86 → 521
      PLN02241; glucose-1-phosphate adenylyltransferase

    2. NM_001342527.1 → NP_001328715.1  Glucose-1-phosphate adenylyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P55231, Q9ZR38
      UniProtKB/TrEMBL
      A0A178US50, A0A5S9Y0F3, A0A654FWW3
      Conserved Domains (1) summary
      PLN02241
      Location:86 → 521
      PLN02241; glucose-1-phosphate adenylyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P55231.2

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