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    TRM7 GPI-anchored adhesin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825034, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM7
    Official Full Name
    GPI-anchored adhesin-like protein
    Primary source
    TAIR:AT3G58650
    Locus tag
    AT3G58650
    See related
    Araport:AT3G58650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TON1 Recruiting Motif 7
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    Genomic context

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    See TRM7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21696072..21699998, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene Mitogen activated protein kinase kinase kinase-like protein Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene 2-aminoethanethiol dioxygenase, putative (DUF1637)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The preprophase band of microtubules controls the robustness of division orientation in plants. Schaefer E, et al. Science, 2017 Apr 14. PMID 28408602
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115727.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within establishment of mitotic spindle orientation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within preprophase band assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in preprophase band IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GPI-anchored adhesin-like protein
    NP_191424.5
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21696072..21699998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115727.7 → NP_191424.5  GPI-anchored adhesin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191424.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V740, A0A384KX90, A0A5S9XM03, Q9M2F2
      Conserved Domains (2) summary
      pfam14309
      Location:654 → 804
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:79 → 104
      VARLMGL; DUF761-associated sequence motif
    Nucleotide Protein
    Heading Accession and Version

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