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    las1-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831096, updated on 18-Sep-2024

    Summary

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    Official Full Name
    las1-like family protein
    Primary source
    TAIR:AT5G12220
    Locus tag
    AT5G12220
    See related
    Araport:AT5G12220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXC9.18; MXC9_18
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (3950133..3953150)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pyrimidine 2 Neighboring gene RAB geranylgeranyl transferase beta subunit 1 Neighboring gene mediator of RNA polymerase II transcription subunit 19a-like protein Neighboring gene uncharacterized protein Neighboring gene CLAVATA3/ESR-RELATED 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203364.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Las1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    las1-like family protein
    NP_001190293.1
    • las1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Las1-like (InterPro:IPR007174).
    NP_196783.2
    • las1-like family protein; CONTAINS InterPro DOMAIN/s: Las1-like (InterPro:IPR007174); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3950133..3953150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121260.3 → NP_196783.2  las1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196783.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDE7, A0A5S9Y4B5, A0A7G2FD33, F4JZH9, Q8RXE3
      Conserved Domains (1) summary
      pfam04031
      Location:31 → 181
      Las1; Las1-like

    2. NM_001203364.1 → NP_001190293.1  las1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190293.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4B5, A0A7G2FD33, F4JZI0, Q8RXE3
      Conserved Domains (1) summary
      pfam04031
      Location:31 → 171
      Las1; Las1-like
    Nucleotide Protein
    Heading Accession and Version

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