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    regulator of nonsense transcript protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831258, updated on 18-Sep-2024

    Summary

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    Official Full Name
    regulator of nonsense transcript protein
    Primary source
    TAIR:AT5G14090
    Locus tag
    AT5G14090
    See related
    Araport:AT5G14090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLAZY1; LAZY 1; LAZY1; MUA22.9; MUA22_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4547202..4549675)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene non-intrinsic ABC protein 14 Neighboring gene uncharacterized protein Neighboring gene peroxidase (DUF 3339)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Switching the Direction of Stem Gravitropism by Altering Two Amino Acids in AtLAZY1. Yoshihara T, et al. Plant Physiol, 2020 Feb. PMID 31818902, Free PMC Article
    2. AtLAZY1 is a signaling component required for gravitropism of the Arabidopsis thaliana inflorescence. Yoshihara T, et al. Plant J, 2013 Apr. PMID 23331961
    3. BRXL4-LAZY1 interaction at the plasma membrane controls Arabidopsis branch angle and gravitropism. Che X, et al. Plant J, 2023 Jan. PMID 36478485, Free PMC Article
    4. The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots. Taniguchi M, et al. Plant Cell, 2017 Aug. PMID 28765510, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. BRXL4-LAZY1 interaction at the plasma membrane controls Arabidopsis branch angle and gravitropism.
      Title: BRXL4-LAZY1 interaction at the plasma membrane controls Arabidopsis branch angle and gravitropism.
    2. Switching the Direction of Stem Gravitropism by Altering Two Amino Acids in AtLAZY1.
      Title: Switching the Direction of Stem Gravitropism by Altering Two Amino Acids in AtLAZY1.
    3. mutations reversed the growth angle of lateral branches and roots.
      Title: The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots.
    Submit: New GeneRIF Correction

    General gene information

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    NM_121412.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in gravitropism IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within negative gravitropism IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of auxin polar transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcript protein
    NP_196913.2
    • unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4547202..4549675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343315.1 → NP_001331364.1  regulator of nonsense transcript protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDM4

    2. NM_121412.4 → NP_196913.2  regulator of nonsense transcript protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196913.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5XV40, Q9FMU1
      UniProtKB/TrEMBL
      A0A5S9Y3Z7, A0A6S4LUI6, A0A7G2F7F8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XV40.1

    Gene LinkOut

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