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    GMI1 gamma-irradiation and mitomycin c induced 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832495, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GMI1
    Official Full Name
    gamma-irradiation and mitomycin c induced 1
    Primary source
    TAIR:AT5G24280
    Locus tag
    AT5G24280
    See related
    Araport:AT5G24280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1; MOP9.10; MOP9_10
    Summary
    Encodes GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein. Involved in somatic homologous recombination.
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    Genomic context

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    See GMI1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    40
    Sequence:
    Chromosome: 5; NC_003076.8 (8251220..8262603, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene En/Spm-like transposon Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Vacuolar iron transporter (VIT) family protein Neighboring gene Glycogen/starch synthases, ADP-glucose type

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis. Böhmdorfer G, et al. Plant J, 2011 Aug. PMID 21481027
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. GMI1 is expressed in the region of the shoot/floral meristems and young flowers.
      Title: GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_122334.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within double-strand break repair via homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    gamma-irradiation and mitomycin c induced 1
    NP_197816.3
    • GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8251220..8262603 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343868.1 → NP_001330245.1  gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA87, A0A5S9Y710

    2. NM_001343869.1 → NP_001330246.1  gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA87, A0A5S9Y710

    3. NM_122334.3 → NP_197816.3  gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197816.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KFS5, Q9FNF4
      UniProtKB/TrEMBL
      A0A5S9Y710, A0A654G3Z6
      Conserved Domains (2) summary
      smart00918
      Location:1445 → 1494
      Lig_chan-Glu_bd; Ligated ion channel L-glutamate- and glycine-binding site
      cl00075
      Location:144 → 242
      HATPase; Histidine kinase-like ATPase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KFS5.1

    Gene LinkOut

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