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    hypothetical protein (DUF1666) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833974, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1666)
    Primary source
    TAIR:AT5G39785
    Locus tag
    AT5G39785
    See related
    Araport:AT5G39785
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT5G39780
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (15928765..15932347)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene homeobox protein 23 Neighboring gene Restriction endonuclease, type II-like superfamily protein Neighboring gene Gag-Pol polyprotein/retrotransposon Neighboring gene PROTEIN TARGETING TO STARCH (PTST) Neighboring gene Mitochondrial ribosomal protein L27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344303.1
    NM_001344304.1
    NM_001344305.1
    NM_123341.2
    NM_180776.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1666)
    NP_001318709.1
    • FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G69610.1); Has 521 Blast hits to 476 proteins in 101 species: Archae - 0; Bacteria - 15; Metazoa - 89; Fungi - 60; Plants - 93; Viruses - 4; Other Eukaryotes - 260 (source: NCBI BLink).
    NP_568572.2
    • FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G69610.1); Has 458 Blast hits to 427 proteins in 93 species: Archae - 0; Bacteria - 15; Metazoa - 64; Fungi - 53; Plants - 93; Viruses - 4; Other Eukaryotes - 229 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15928765..15932347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344303.1 → NP_001318709.1  hypothetical protein (DUF1666) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNF4, Q9FIW8

    2. NM_001344304.1 → NP_001331218.1  hypothetical protein (DUF1666) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNF4, Q9FIW8

    3. NM_001344305.1 → NP_001331219.1  hypothetical protein (DUF1666) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNF4, A0A1P8BD72

    4. NM_123341.2 → NP_568572.2  hypothetical protein (DUF1666) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568572.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNF4, F4KFU9
      Conserved Domains (1) summary
      pfam07891
      Location:349 → 606
      DUF1666; Protein of unknown function (DUF1666)

    5. NM_180776.2 → NP_851107.1  hypothetical protein (DUF1666) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851107.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNF4, Q9FIW8
      Conserved Domains (1) summary
      pfam07891
      Location:349 → 605
      DUF1666; Protein of unknown function (DUF1666)
    Nucleotide Protein
    Heading Accession and Version

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